N-dimensional Schrödinger equation at finite temperature using the Nikiforov–Uvarov method

The N-radial Schrödinger equation is analytically solved. The Cornell potential is extended to finite temperature. The energy eigenvalues and the wave functions are calculated in the N-dimensional form using the Nikiforov–Uvarov (NV) method. At zero temperature, the energy eigenvalues and the wave functions are obtained in good agreement with other works. The present results are applied on the charmonium and bottomonium masses at finite temperature. The effect of dimensionality number is investigated on the quarkonium masses. A comparison is discussed with other works, which use the QCD sum rules and lattice QCD. The present approach successfully generalizes the energy eigenvalues and corresponding wave functions at finite temperature in the N-dimensional representation. In addition, the present approach can successfully be applied to the quarkonium systems at finite temperature.     

Bonding and Acidity of the Formal Hydride in the Prototypical Au9(PPh3)8H2+ Nanocluster

The role of hydrogen atoms as surface ligands on metal nanoclusters is of profound importance but remains difficult to directly study. While hydrogen atoms often appear to be incorporated formally as hydrides, evidence suggests that they donate electrons to the cluster's delocalized superatomic orbitals and may consequently behave as acidic protons that play key roles in synthetic or catalytic mechanisms. Here we directly test this assertion for the prototypical Au₉(PPh₃)₈H²⁺ nanocluster, formed by addition of a hydride to the well-characterized Au₉(PPh₃)₈³⁺. Using gas-phase infrared spectroscopy, we were able to unambiguously isolate Au₉(PPh₃)₈H²⁺ and Au₉(PPh₃)₈D²⁺, revealing an Au−H stretching mode at 1528 cm⁻¹ that shifts to 1038 cm⁻¹ upon deuteration. This shift is greater than the maximum expected for a typical harmonic potential, suggesting a potential governing cluster-H bonding that has some square-well character consistent with the hydrogen nucleus behaving as a metal atom in the cluster core. Complexing this cluster with very weak bases reveals a redshift of 37 cm⁻¹ in the Au−H vibration, consistent with those typically seen for moderately acidic groups in gas phase molecules and providing an estimate of the acidity of Au₉(PPh₃)₈H²⁺, at least with regard to its surface reactivity.     

New azo derivative and their divalent metal ion complexes: Synthesis,characterization, and evaluation of their antibacterial activity

A new azo derivative 3-((4-H1benzo[d]imidazole-2-yl)-4-hydroxy benzaldehyde was prepared by reaction of benzimidazole derivative with 4-hydroxy benzaldehyde. The all-final compounds were diagnosis and determined the structure of these compounds using a variety of spectroscopic methods, including 1H-NMR, FT-IR, UV-Vis, mass spectrometry magnetic susceptibility and atomic absorption spectroscopy. The results showed that all metal ion complexes have an octahedral shape. Antimicrobial activity of the ligand and its metal ion complex had been tested against some selected microorganism such Streptococcus pyogenes a species of Gram-positive and Pseudomonas aeruginosa is a common bacterium gram-negative, all prepared compounds displayed a strong antibacterial activity. Taken together, the results of the current study indicated that the new Azo derivative and their divalent metal ion complexes could be used as a future strategy for other biomedical applications.     

Combined DFT and wave function theory approach to excited states of lanthanide luminescent materials: A case study of LaF3:Ce3+

Lanthanide luminescent materials play key roles in modern society, but their first-principles treatment remains a great challenge due to complex manifold of electronic excited states and the difficulty in performing excited state structural relaxations that is necessary to model luminescent properties. Herein, we propose a practical approach that combines embedded cluster model (ECM) based multi-configurational wave function theory (WFT) and occupancy constrained density-functional theory plus the Hubbard U correction (OC-DFT + U) to treat lanthanide doped luminescent materials, using LaF₃:Ce³⁺, a typical scintillator with low symmetry, as a case study. We show that the combined approach yields accurate absorption energies with an error on the order of 200 cm⁻¹, but the emission energies are significantly underestimated, the origin of which is further clarified by vibrationally resolved absorption and emission spectra calculation. This work demonstrates the possibility of combining ECM-based wave function theory and periodic DFT into a comprehensive computational scheme for lanthanide luminescent materials and highlights the limitations of the current implementation of OC-DFT + U for excited state structural optimization.     

质子水合结构的振动态密度分析

使用基于多态经验价键模型的分子动力学模拟, 对水溶液中质子的水合结构及其在质子传递过程中的动力学过程进行了研究. 在价键模型的方法下, 质子的水合结构主要以H₉O₄⁺(Eigen)以及过渡态的H₅O₂⁺(Zundel)结构形态存在, 且在这两种结构中以Eigen的形态表现明显. 通过对质子传递过程中不同水合结构的态密度频谱分析, 发现一个在2000~3000 cm^-1范围内的明显连续的宽吸收谱带, 主要归因于Eigen结构的贡献, 这些特征峰的出现与水合氢离子第一溶剂化层内的强氢键作用密切相关. 对于Zundel的结构, 在1760 cm^-1处出现一个较为明显的肩峰, 归属为质子传递模式的特征振动. 通过对质子水合结构态密度频谱的分析, 可望增强对于稀酸溶液红外光谱中的连续宽吸收带以及质子传递的微观动力学过程的理解.     

实时直接分析质谱分析中草药多糖

建立了一种机械力化学提取法和实时直接分析质谱(DART-MS)分析相结合的中草药多糖分析方法,同时测定了黄芪、银耳、百合、茯苓、鼓槌石斛、金钗石斛、铁皮石斛和党参8种中草药多糖。比较了机械力化学提取(MCE)法与传统方法的提取效果,并优化了MCE法的提取参数。通过体积排阻色谱分离中草药多糖,建立分子质量校准曲线,估算了多糖分子质量。利用DART-MS直接裂解多糖大分子,可瞬时获得m/z<350的碎片离子,不同的中草药多糖得到的特征性的质谱离子峰可用于多糖样品的有效区分。该方法具有简单、快速、高通量、无需预消化的特点,是直接从复杂多糖大分子中获取特征指纹图谱的有力工具。     

Computational Study of the Electron Spectra of Vapor-Phase Indole and Four Azaindoles

After geometry optimization, the electron spectra of indole and four azaindoles are calculated by density functional theory. Available experimental photoemission and excitation data for indole and 7-azaindole are used to compare with the theoretical values. The results for the other azaindoles are presented as predictions to help the interpretation of experimental spectra when they become available.     

Molecular Structure,Thermodynamic and Spectral Characteristics of Metal-Free and Nickel Complex of Tetrakis(1,2,5-thiadiazolo)porphyrazine

The Knudsen effusion method with mass spectrometric control of the vapor composition was used to study the possibility of a congruent transition to the gas phase and to estimate the enthalpy of sublimation of metal-free tetrakis(1,2,5-thiadiazolo)porphyrazine and its nickel complex (H₂TTDPz and NiTTDPz, respectively). The geometrical and electronic structure of H₂TTDPz and NiTTDPz in ground and low-lying excited electronic states were determined by DFT calculations. The electronic structure of NiTTDPz was studied by the complete active space (CASSCF) method, following accounting dynamic correlation by multiconfigurational quasi-degenerate second-order perturbation theory (MCQDPT2). A geometrical structure of D_2h and D_4h symmetry was obtained for H₂TTDPz and NiTTDPz, respectively. According to data obtained by the MCQDPT2 method, the nickel complex possesses the ground state ¹A_1g, and the wave function of the ground state has the form of a single determinant. Electronic absorption and vibrational (IR and resonance Raman) spectra of H₂TTDPz and NiTTDPz were studied experimentally and simulated theoretically.     

Chimera Spectrum Diagnostics for Peptides Using Two-Dimensional Partial Covariance Mass Spectrometry

The rate of successful identification of peptide sequences by tandem mass spectrometry (MS/MS) is adversely affected by the common occurrence of co-isolation and co-fragmentation of two or more isobaric or isomeric parent ions. This results in so-called `chimera spectra’, which feature peaks of the fragment ions from more than a single precursor ion. The totality of the fragment ion peaks in chimera spectra cannot be assigned to a single peptide sequence, which contradicts a fundamental assumption of the standard automated MS/MS spectra analysis tools, such as protein database search engines. This calls for a diagnostic method able to identify chimera spectra to single out the cases where this assumption is not valid. Here, we demonstrate that, within the recently developed two-dimensional partial covariance mass spectrometry (2D-PC-MS), it is possible to reliably identify chimera spectra directly from the two-dimensional fragment ion spectrum, irrespective of whether the co-isolated peptide ions are isobaric up to a finite mass accuracy or isomeric. We introduce ‘3-57 chimera tag’ technique for chimera spectrum diagnostics based on 2D-PC-MS and perform numerical simulations to examine its efficiency. We experimentally demonstrate the detection of a mixture of two isomeric parent ions, even under conditions when one isomeric peptide is at one five-hundredth of the molar concentration of the second isomer.     

Perturbating Intramolecular Hydrogen Bonds through Substituent Effects or Non-Covalent Interactions

An analysis of the effects induced by F, Cl, and Br-substituents at the α-position of both, the hydroxyl or the amino group for a series of amino-alcohols, HOCH₂(CH₂)_nCH₂NH₂ (n = 0–5) on the strength and characteristics of their OH···N or NH···O intramolecular hydrogen bonds (IMHBs) was carried out through the use of high-level G4 ab initio calculations. For the parent unsubstituted amino-alcohols, it is found that the strength of the OH···N IMHB goes through a maximum for n = 2, as revealed by the use of appropriate isodesmic reactions, natural bond orbital (NBO) analysis and atoms in molecules (AIM), and non-covalent interaction (NCI) procedures. The corresponding infrared (IR) spectra also reflect the same trends. When the α-position to the hydroxyl group is substituted by halogen atoms, the OH···N IMHB significantly reinforces following the trend H < F < Cl < Br. Conversely, when the substitution takes place at the α-position with respect to the amino group, the result is a weakening of the OH···N IMHB. A totally different scenario is found when the amino-alcohols HOCH₂(CH₂)_nCH₂NH₂ (n = 0–3) interact with BeF₂. Although the presence of the beryllium derivative dramatically increases the strength of the IMHBs, the possibility for the beryllium atom to interact simultaneously with the O and the N atoms of the amino-alcohol leads to the global minimum of the potential energy surface, with the result that the IMHBs are replaced by two beryllium bonds.